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JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56

Added by Raik Müller about 2 years ago

Use Case:

looping an evaluation method of xPaths over several XML Files.

I tried first to "release" the object after each evaluation and changed than to impl. "release()" after the evaluation --> same problems

proc = saxonc.PySaxonProcessor(license=True)
xp = proc.new_xpath_processor()


def evaluate_cda_file(self, xPath, cda_file_path):
        cda_file_path = str(cda_file_path)
        results = None
        try:

            self.xp.declare_namespace("xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance")
            self.xp.declare_namespace("", "urn:hl7-org:v3")
            self.xp.set_context(file_name=cda_file_path)
            results = self.xp.evaluate(xPath)
         
            self.xp.clear_parameters()
            self.xp.clear_properties()

        except:
            print("ERROR")

        if results is None:
            return False
        return True

def clean_up(self):
        self.proc.release()

Error:

*JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 Please, contact the vendor of the application. Core dump will be written to "/cores/core.2821" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited" Extra information about error is saved in the "jet_err_2821.txt" file.

Fatal Error: another attempt of termination from the same thread. *

Similar errors happen in the same usecase (see attachment):

system exception at 0x000000010b2ce870 system exception at 0x000000010b2b08 system exception at 0x0000000000000000

My UnitTests work fine a several time but randomly after a couple of times I get the error. When I use the evaluation method in a for loop it crashes immediately.

Thanks in advance


Replies (31)

Please register to reply

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Thank you for reporting the problem and sending in a repro.

I will try at my end to reproduce the error and investigate further what is happening.

Looking at the error log there is a 'segmentation error' reported:

Signal 11 (SIGSEGV)
siginfo: si_signo 11, si_errno 0, si_code 0, si_addr 0x0000000000000000

This is useful as it probably means internally we trying to access a NULL value somewhere. My suspicion is the results variable which is of XdmValue type returned by the evaluate function is not being deleted safely in the destructor, especially in the for loop.

To help in the investigation it will be helpful to us to have some more information in the example code: Specifically, please could you supply us the XML file or string for the variable cda_file_path or something simple if it is too big or sensitive. Also we need to see the XPath expression used for the variable xPath.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

This support query is specific to Saxon/C, unfortunately I cannot move this post to the Saxon/C project here: https://saxonica.plan.io/projects/saxon-c/boards

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

Thanks for the fast answer!

I checked your recommendation and updated the code. Problem is still the same or similar:

Code for validation:


class CDAEvaluator:

    # SAXCON Library
    proc = saxonc.PySaxonProcessor(license=True)
    xp = proc.new_xpath_processor()

    def evaluate_cda_file(self, xPath, cda_file_path):
        try:
            self.xp.declare_namespace("xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance")
            self.xp.declare_namespace("", "urn:hl7-org:v3")
            self.xp.set_context(file_name=cda_file_path)

            results = self.xp.evaluate(xPath)
        except:
            print("---------------ERROR----------------")

        if results is None:
            del results
            return False
        del results
        return True

    def clean_up(self):
        self.xp.clear_parameters()
        self.xp.clear_properties()
        self.proc.clear_configuration_properties()
        self.proc.release()

UNITTEST (that works)


class TestCDAEvaluator(unittest.TestCase):

    #Testdata
    xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
    xPath_a_g_200 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 1820]/patientRole/patient/birthTime/@value"""


    cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
        #File mit Patienten aelter 6 Jahre
    cda_simple_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/simple_birthday.xml"


    def test_evaluate_cda_file_True(self):
        result = evaluator.evaluate_cda_file(evaluator, self.xPath_a_g_6, self.cda_test_file)
        print(result)
        evaluator.clean_up(evaluator)
        self.assertTrue(result)

    def test_evaluate_cda_file_False(self):
        result = evaluator.evaluate_cda_file(evaluator, self.xPath_a_g_200, self.cda_simple_file)
        print(result)
        evaluator.clean_up(evaluator)
        self.assertFalse(result)


if __name__ == '__main__':
    unittest.main()


CONSOLE OUTPUT:


False
True
----------------------------------------------------------------------
Ran 2 tests in 0.018s

OK

CODE ON THE SERVER-BACKEND


class Evaluation:


    def start_evaluation(id, only_current_patient_cohort):
        evaluator = CDAEvaluator()
        files = r.CDAFile.objects.all()
        if only_current_patient_cohort is True:
            print("nur aktuelle Kohorte verwenden für Prüfung")
            #files = ueberschreiben

        criterias = r.Criterium.objects.all().filter(criteria_id=id)

        for c in criterias:
            for f in files:
            #only for testing with loop:
                xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
                cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
                #result = evaluator.evaluate_cda_file(c.xPath, f.file)
                result = evaluator.evaluate_cda_file(xPath_a_g_6, cda_test_file)
                print (result)

        evaluator.clean_up()

CODE ON THE SERVER-BACKEND v2.0 that I tested


class Evaluation:


    def start_evaluation(id, only_current_patient_cohort):
       
        files = r.CDAFile.objects.all()
        if only_current_patient_cohort is True:
            print("nur aktuelle Kohorte verwenden für Prüfung")
            #files = ueberschreiben

        criterias = r.Criterium.objects.all().filter(criteria_id=id)

        for c in criterias:
            for f in files:
            #only for testing with loop:
                evaluator = CDAEvaluator()
                xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
                cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
                #result = evaluator.evaluate_cda_file(c.xPath, f.file)
                result = evaluator.evaluate_cda_file(xPath_a_g_6, cda_test_file)
                print (result)

                evaluator.clean_up()

OUTPUT:


JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x000000010f606c49
Please, contact the vendor of the application.
Core dump will be written to "/cores/core.7665" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited"
Extra information about error is saved in the "jet_err_7665.txt" file.

Trying to unregister a component with mounted embedded files: /usr/local/lib/libsaxoneec.dylib


I attached the last error file and the xml file

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

even more strange is that I made the method simple and without the for loop and I get the same error even when it is very similar to the test method in the Unittext:

import recruitmenttool.models as r
from .CDAEvaluator import CDAEvaluator as evaluator

class Evaluation:


    def start_evaluation(id, only_current_patient_cohort):

        xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
        cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"

        result = evaluator.evaluate_cda_file(evaluator, xPath_a_g_6, cda_test_file)
        evaluator.clean_up(evaluator)
        print (result)

JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x000000010df16c49
Please, contact the vendor of the application.
Core dump will be written to "/cores/core.9960" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited"
Extra information about error is saved in the "jet_err_9960.txt" file.


The error comes for sure when the Evaluation Method calls "results = self.xp.evaluate(xPath)"

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Thanks for sending in the python script and XML data files. I ran the script with the linux debugging tool gdb , which is helpful to get around the JET excelsior interception of C++ exceptions.

Here is the command I ran:

gdb python3 prog.py

Within gdb:

handle SIG35 noprint nostop
run prog.py
bt

gdb output:

Saxon/C 1.2.1 running with Saxon-HE 9.9.1.6C from Saxonica
New processor created, Processor: -175438736
xpathString: //recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value
DEBUG: SaxonCAPI: param-name: resources, type of Value= java.lang.String
DEBUG: SaxonCAPI: param-name: s, type of Value= java.lang.String

Thread 1 "python3" received signal SIGSEGV, Segmentation fault.
0x0000000000b340d0 in ?? ()
(gdb) bt
#0  0x0000000000b340d0 in ?? ()
#1  0x00007ffff677c120 in JNIEnv_::DeleteGlobalRef (gref=<optimised out>, 
    this=<optimised out>) at ../jni/jni.h:848
#2  SaxonProcessor::~SaxonProcessor (this=0xb5cfc0, __in_chrg=<optimised out>)
    at ../SaxonProcessor.cpp:276
#3  0x00007ffff6743334 in __pyx_pf_6saxonc_16PySaxonProcessor_2__dealloc__ (
    __pyx_v_self=0x7ffff7f5d258) at saxonc.cpp:1862
#4  __pyx_pw_6saxonc_16PySaxonProcessor_3__dealloc__ (
    __pyx_v_self=0x7ffff7f5d258) at saxonc.cpp:1845
#5  __pyx_tp_dealloc_6saxonc_PySaxonProcessor (o=0x7ffff7f5d258)
    at saxonc.cpp:34598
#6  0x00000000005929f1 in ?? ()
#7  0x00000000005890f3 in ?? ()
#8  0x0000000000591ae9 in PyDict_SetItem ()
#9  0x0000000000527d9a in PyImport_Cleanup ()
#10 0x000000000062aa5e in Py_Finalize ()
#11 0x000000000063d6f6 in Py_Main ()
#12 0x00000000004cfd11 in main (

In the stack trace the seg error is coming in the jni cal DeleteGlobalRef. This jni method is used in the SaxonProcessor destructor. See the file file SaxonProcessor.cpp.

The following line of code the SaxonProcessor.cpp needs removing:

SaxonProcessor::sxn_environ->env->DeleteGlobalRef(proc);

When I comment this line out and rebuild the product the python script works.

Also the following code snippet in the SaxonProcessor constructor needs removing

SaxonProcessor::sxn_environ->env->NewGlobalRef(proc);

I have removed it in our development branch some time ago as I detected a problem in this area, but did not release users would trip up on this bug as it is present in the released code. The jni use of NewGlobalRef/DeleteGlobalRef was wrongly used.

I hope that is the same problem when used in the for loop.

I will raise a bug for this issue shortly for you to keep track and for other users to find the work around before the next release.

Thanks again for reporting the issue.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

I have the 1.2.1 EEC libsaxon and this two lines of code are not existing. File is attached

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Yes you are right. I seem to have a modified version.

I now have the same version as in the release. So far I cannot reproduce the error.

Are you able to run the debugger tool gdb?

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

Did you also try it with a loop?

In my UnitTest it also works fine but when I run the UnitTest 4-5 Times in a row or looping I get this exception and my python3 crashes.

#UNIT TEST:

    def test_evaluate_cda_file_True(self):
        for x in range(6):
            result = evaluator.evaluate_cda_file(evaluator, self.xPath_a_g_6, self.cda_test_file)
            print(result)
            evaluator.clean_up(evaluator)
            self.assertTrue(result)

#crashes after the first loop

#output
Python(10138,0x7fffc3d253c0) malloc: *** error for object 0x7fadfcded4b0: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug

The script what is always crashing is impl. in a Python Django Backend. Neither a loop or just with one call it always crashes what confuses me.

I will try to install and run it with the debugger tool tomorrow.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

You should not call the release() function more than once in a program. I can see the clean_up calls the release function inside the for loop

Only use it at the end of the python script.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

Thanks, that fixed the problem in my UniTest and I can run a loop of 200 times and no problems.

Do you have any idea what could be the problem when I run the same process in my backend?

Two different behaviours:

I loop the method and get following output on my console:

[JR_lazyJITCodeGen @ 1]: Failed to initialize lazy JIT compiler thread

JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x00000001070e3c49
Please, contact the vendor of the application.
Core dump will be written to "/cores/core.12693" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited"
Extra information about error is saved in the "jet_err_12693.txt" file.

The error happens when I call inside my method "results = xp.evaluate(xPath)"

Plus the console from my python django server says after the error:

Trying to unregister a component with mounted embedded files: /usr/local/lib/libsaxoneec.dylib

In the Error File:

" JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x00000001070e3c49 Please, contact the vendor of the application. Core dump will be written to "/cores/core.12693" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited" "

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

I will have to install the python django server and experiment how it working with Saxon/C.

  1. I guess python web-application servers is an area that is under tested with Saxon/C. I suspect that this is some threading issue with how web requests are made and how and when the call of the release function.

  2. I think the release() function is not being called at the end of a python script. But difficult to say without having the environment to investigate it further.

I will try to setup the django and reproduce the error.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

btw: The Unit Test I run in Pycharm

I trigger now the UnitTest with the method from the server backend and get the same results - but it works while running in Pycharm:

Python Crash:

Process:               Python [14491]
Path:                  /usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/Resources/Python.app/Contents/MacOS/Python
Identifier:            Python
Version:               3.7.7 (3.7.7)
Code Type:             X86-64 (Native)
Parent Process:        Python [14382]
Responsible:           Python [14491]
User ID:               501

Date/Time:             2020-04-16 11:55:40.700 +0200
OS Version:            Mac OS X 10.12.5 (16F73)
Report Version:        12
Anonymous UUID:        BCB5F78F-17E8-C18D-328C-D2B78E33E500


Time Awake Since Boot: 9000 seconds

System Integrity Protection: disabled

Crashed Thread:        15

Exception Type:        EXC_BAD_ACCESS (SIGABRT)
Exception Codes:       EXC_I386_GPFLT
Exception Note:        EXC_CORPSE_NOTIFY

Application Specific Information:
abort() called

Thread 0:: Dispatch queue: com.apple.main-thread
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   org.python.python             	0x000000010db56552 take_gil + 230
3   org.python.python             	0x000000010db56a82 PyEval_RestoreThread + 31
4   org.python.python             	0x000000010dba7eaf ScandirIterator_iternext + 318
5   org.python.python             	0x000000010dade5f1 list_extend + 169
6   org.python.python             	0x000000010dadf7ec list___init__ + 136
7   org.python.python             	0x000000010db0525e type_call + 178
8   org.python.python             	0x000000010daca2a2 _PyObject_FastCallKeywords + 359
9   org.python.python             	0x000000010db5fd2d call_function + 729
10  org.python.python             	0x000000010db584dd _PyEval_EvalFrameDefault + 5716
11  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
12  org.python.python             	0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
13  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
14  org.python.python             	0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
15  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
16  org.python.python             	0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
17  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
18  org.python.python             	0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
19  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
20  org.python.python             	0x000000010db5b038 _PyEval_EvalFrameDefault + 16815
21  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
22  org.python.python             	0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
23  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
24  org.python.python             	0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
25  org.python.python             	0x000000010dad5f96 gen_send_ex + 244
26  org.python.python             	0x000000010db55321 builtin_next + 99
27  org.python.python             	0x000000010dacaf0c _PyMethodDef_RawFastCallKeywords + 525
28  org.python.python             	0x000000010daca445 _PyCFunction_FastCallKeywords + 44
29  org.python.python             	0x000000010db5fcc4 call_function + 624
30  org.python.python             	0x000000010db584dd _PyEval_EvalFrameDefault + 5716
31  org.python.python             	0x000000010daca824 function_code_fastcall + 116
32  org.python.python             	0x000000010db5fd34 call_function + 736
33  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
34  org.python.python             	0x000000010daca824 function_code_fastcall + 116
35  org.python.python             	0x000000010db5fd34 call_function + 736
36  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
37  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
38  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
39  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
40  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
41  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
42  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
43  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
44  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
45  org.python.python             	0x000000010dacb209 _PyObject_Call_Prepend + 150
46  org.python.python             	0x000000010daca553 PyObject_Call + 136
47  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
48  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
49  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
50  org.python.python             	0x000000010dacb209 _PyObject_Call_Prepend + 150
51  org.python.python             	0x000000010daca553 PyObject_Call + 136
52  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
53  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
54  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
55  org.python.python             	0x000000010dacb209 _PyObject_Call_Prepend + 150
56  org.python.python             	0x000000010daca553 PyObject_Call + 136
57  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
58  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
59  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
60  org.python.python             	0x000000010dacb209 _PyObject_Call_Prepend + 150
61  org.python.python             	0x000000010daca553 PyObject_Call + 136
62  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
63  org.python.python             	0x000000010daca824 function_code_fastcall + 116
64  org.python.python             	0x000000010db5fd34 call_function + 736
65  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
66  org.python.python             	0x000000010daca824 function_code_fastcall + 116
67  org.python.python             	0x000000010db5fd34 call_function + 736
68  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
69  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
70  org.python.python             	0x000000010daca40a _PyFunction_FastCallKeywords + 234
71  org.python.python             	0x000000010db5fd34 call_function + 736
72  org.python.python             	0x000000010db584dd _PyEval_EvalFrameDefault + 5716
73  org.python.python             	0x000000010daca824 function_code_fastcall + 116
74  org.python.python             	0x000000010db5fd34 call_function + 736
75  org.python.python             	0x000000010db584dd _PyEval_EvalFrameDefault + 5716
76  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
77  org.python.python             	0x000000010db56e01 PyEval_EvalCode + 42
78  org.python.python             	0x000000010db85944 run_mod + 54
79  org.python.python             	0x000000010db84990 PyRun_FileExFlags + 180
80  org.python.python             	0x000000010db84050 PyRun_SimpleFileExFlags + 283
81  org.python.python             	0x000000010db9c43b pymain_main + 5051
82  org.python.python             	0x000000010db9cd2f _Py_UnixMain + 75
83  libdyld.dylib                 	0x00007fffbae12235 start + 1

Thread 1:
0   libsystem_kernel.dylib        	0x00007fffbaf411ce __sigsuspend + 10
1   libsaxoneec.dylib             	0x00000001107c4e99 JNI_GetDefaultJavaVMInitArgs + 750137
2   ???                           	0x00000002ffffffff 0 + 12884901887

Thread 2:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 3:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 4:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 5:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 6:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 7:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 8:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb49263 0x10fb45000 + 16995

Thread 9:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb54c58 0x10fb45000 + 64600

Thread 10:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb551d0 0x10fb45000 + 66000
3   ???                           	0x0000206000000000 0 + 35596688949248

Thread 11:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb54c58 0x10fb45000 + 64600

Thread 12:
0   libsystem_pthread.dylib       	0x00007fffbb02b070 start_wqthread + 0
1   ???                           	0x007865646e496d65 0 + 33888479226719589

Thread 13:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   libsaxoneec.dylib             	0x000000010fb551d0 0x10fb45000 + 66000

Thread 14:
0   libsystem_kernel.dylib        	0x00007fffbaf40bf2 __psynch_cvwait + 10
1   libsystem_pthread.dylib       	0x00007fffbb02c7fa _pthread_cond_wait + 712
2   org.python.python             	0x000000010db56552 take_gil + 230
3   org.python.python             	0x000000010db56a82 PyEval_RestoreThread + 31
4   select.cpython-37m-darwin.so  	0x000000010e0f39d6 poll_poll + 455
5   org.python.python             	0x000000010dacadf2 _PyMethodDef_RawFastCallKeywords + 243
6   org.python.python             	0x000000010dacf7ea _PyMethodDescr_FastCallKeywords + 82
7   org.python.python             	0x000000010db5fd61 call_function + 781
8   org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
9   org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
10  org.python.python             	0x000000010daca40a _PyFunction_FastCallKeywords + 234
11  org.python.python             	0x000000010db5fd34 call_function + 736
12  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
13  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
14  org.python.python             	0x000000010daca40a _PyFunction_FastCallKeywords + 234
15  org.python.python             	0x000000010db5fd34 call_function + 736
16  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
17  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
18  org.python.python             	0x000000010daca40a _PyFunction_FastCallKeywords + 234
19  org.python.python             	0x000000010db5fd34 call_function + 736
20  org.python.python             	0x000000010db5858c _PyEval_EvalFrameDefault + 5891
21  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
22  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
23  org.python.python             	0x000000010dacb209 _PyObject_Call_Prepend + 150
24  org.python.python             	0x000000010daca553 PyObject_Call + 136
25  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
26  org.python.python             	0x000000010db6060d _PyEval_EvalCodeWithName + 1928
27  org.python.python             	0x000000010daca06a _PyFunction_FastCallDict + 447
28  org.python.python             	0x000000010db5877c _PyEval_EvalFrameDefault + 6387
29  org.python.python             	0x000000010daca824 function_code_fastcall + 116
30  org.python.python             	0x000000010db5fd34 call_function + 736
31  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
32  org.python.python             	0x000000010daca824 function_code_fastcall + 116
33  org.python.python             	0x000000010db5fd34 call_function + 736
34  org.python.python             	0x000000010db5841c _PyEval_EvalFrameDefault + 5523
35  org.python.python             	0x000000010daca824 function_code_fastcall + 116
36  org.python.python             	0x000000010dacb209 _PyObject_Call_Prepend + 150
37  org.python.python             	0x000000010daca553 PyObject_Call + 136
38  org.python.python             	0x000000010dbc6353 t_bootstrap + 71
39  org.python.python             	0x000000010db8df00 pythread_wrapper + 25
40  libsystem_pthread.dylib       	0x00007fffbb02b93b _pthread_body + 180
41  libsystem_pthread.dylib       	0x00007fffbb02b887 _pthread_start + 286
42  libsystem_pthread.dylib       	0x00007fffbb02b08d thread_start + 13

Thread 15 Crashed:
0   libsystem_kernel.dylib        	0x00007fffbaf40d42 __pthread_kill + 10
1   libsystem_pthread.dylib       	0x00007fffbb02e457 pthread_kill + 90
2   libsystem_c.dylib             	0x00007fffbaea6420 abort + 129

Thread 15 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x0000000000000006  rcx: 0x0000700007303ff8  rdx: 0x0000000000000000
  rdi: 0x0000000000001f07  rsi: 0x0000000000000006  rbp: 0x0000700007304020  rsp: 0x0000700007303ff8
   r8: 0x0000000000000040   r9: 0x00007fffc3cfb2c8  r10: 0x0000000008000000  r11: 0x0000000000000206
  r12: 0x0000000000000000  r13: 0x0000000000000000  r14: 0x000070000730b000  r15: 0x0000000000000001
  rip: 0x00007fffbaf40d42  rfl: 0x0000000000000206  cr2: 0x00007fffc3d07128
  
Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133


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VM Region Summary:
ReadOnly portion of Libraries: Total=230.2M resident=0K(0%) swapped_out_or_unallocated=230.2M(100%)
Writable regions: Total=65.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=65.1G(100%)
 
                                VIRTUAL   REGION 
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===========                     =======  ======= 
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__TEXT                           114.1M      182 
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shared memory                       44K        5 
===========                     =======  ======= 
TOTAL                             65.4G      549 
TOTAL, minus reserved VM space   697.6M      549 

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

O'Neil Delpratt wrote:

  1. I think the release() function is not being called at the end of a python script. But difficult to say without having the environment to investigate it further.

I will try to setup the django and reproduce the error.

  1. I can confirm it already. When I comment out the line "results = xp.evaluate(xPath)" in the evaluation method, so immediately go to the clean_up method the "release" call freezes and the server stoped working.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

The workaround is probably not to call the release() method as it seems to be not allowing other threads to create a new SaxonProcessor. I will look to investigate this further.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Hi,

So far I have install django on my linux machine. Is it possible that you can send some instructions to run on Django and or maybe a zip file of the files you are using please

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

I can provide you a copy of my github repository.

But I think the easiest way would be a Django Server with an REST API and when a POST Method is running I call the Saxon Library to evaluate incoming XML Files.

But just by running a mockup method (based on the python examples von saxon) I could reproduce the error.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Raik Müller wrote:

I can provide you a copy of my github repository.

But I think the easiest way would be a Django Server with an REST API and when a POST Method is running I call the Saxon Library to evaluate incoming XML Files.

To set this up I would need some instructions please

But just by running a mockup method (based on the python examples von saxon) I could reproduce the error.

This would be better if it helps for me to reproduce the error. As long it is self-contained so I can run it without references to another machine please.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

Ok.

So to setup a Django Server with an REST API you can follow most of this article:

https://medium.com/swlh/build-your-first-rest-api-with-django-rest-framework-e394e39a482c

I think you are able to start with point 3 if you installed Django already.

You can skip the stuff with model because you just need the framework installed. After that, you can create a POST Method in the views.py in the app you created.

from django.views.decorators.csrf import csrf_exempt
from rest_framework.response import Response
from rest_framework import status
from rest_framework.decorators import api_view



@csrf_exempt
@api_view(('POST',))
def create_new_criteria(request):
    if request.method == 'POST'
            # run here a method from the examples provided by saxon. 
            # so the error should happen as soon you create in saxon object like: 
            # proc = saxonc.PySaxonProcessor(license=True)
            # I guess you should also use also the xPath object to be sure the error happen 

    return Response(status=status.HTTP_400_BAD_REQUEST)

Don't forget to register your POST Method in the url.py in the app folder:

urlpatterns = [ path('create/', create_new_criteria, name='create_new_criteria'), ]

example: localhost:8080/api/create/

api = the app name you decided in your django project create is the link to the POST Method

If you have any questions, let me know.

I hope I can help you with that.

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Hi,

I am getting the following error after modifying the url.py:

 urlpatterns = [path('admin/', admin.site.urls), path('create/', create_new_criteria, name='create_new_criteria'), ]
NameError: name 'create_new_criteria' is not defined

Any ideas please?

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller about 2 years ago

could be an import error

maybe

from api.views import create_new_criteria

is missing

the api.views.py should look like in the last post

folderstructur:

-project --api ---views.py ---urls.py

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Thanks that was the problem. When I try to run the server I am not getting the following error:

django.core.management.base.SystemCheckError: SystemCheckError: System check identified some issues:

ERRORS:
?: (admin.E408) 'django.contrib.auth.middleware.AuthenticationMiddleware' must be in MIDDLEWARE in order to use the admin application.
?: (admin.E409) 'django.contrib.messages.middleware.MessageMiddleware' must be in MIDDLEWARE in order to use the admin application.
?: (admin.E410) 'django.contrib.sessions.middleware.SessionMiddleware' must be in MIDDLEWARE in order to use the admin application.

System check identified 3 issues (0 silenced)

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

I found the answer I had to change MIDDLEWARE_CLASSES to MIDDLEWARE in the settings.py file

RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt about 2 years ago

Finally got the django server working. Just having issues with finding Saxon/C

(1-25/31)

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