JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56
Added by Raik Müller over 4 years ago
Use Case:
looping an evaluation method of xPaths over several XML Files.
I tried first to "release" the object after each evaluation and changed than to impl. "release()" after the evaluation --> same problems
proc = saxonc.PySaxonProcessor(license=True)
xp = proc.new_xpath_processor()
def evaluate_cda_file(self, xPath, cda_file_path):
cda_file_path = str(cda_file_path)
results = None
try:
self.xp.declare_namespace("xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance")
self.xp.declare_namespace("", "urn:hl7-org:v3")
self.xp.set_context(file_name=cda_file_path)
results = self.xp.evaluate(xPath)
self.xp.clear_parameters()
self.xp.clear_properties()
except:
print("ERROR")
if results is None:
return False
return True
def clean_up(self):
self.proc.release()
Error:
*JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 Please, contact the vendor of the application. Core dump will be written to "/cores/core.2821" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited" Extra information about error is saved in the "jet_err_2821.txt" file.
Fatal Error: another attempt of termination from the same thread. *
Similar errors happen in the same usecase (see attachment):
system exception at 0x000000010b2ce870 system exception at 0x000000010b2b08 system exception at 0x0000000000000000
My UnitTests work fine a several time but randomly after a couple of times I get the error. When I use the evaluation method in a for loop it crashes immediately.
Thanks in advance
jet_err_2821.txt (21.6 KB) jet_err_2821.txt |
Replies (31)
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RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Thank you for reporting the problem and sending in a repro.
I will try at my end to reproduce the error and investigate further what is happening.
Looking at the error log there is a 'segmentation error' reported:
Signal 11 (SIGSEGV)
siginfo: si_signo 11, si_errno 0, si_code 0, si_addr 0x0000000000000000
This is useful as it probably means internally we trying to access a NULL value somewhere. My suspicion is the results
variable which is of XdmValue type returned by the evaluate function is not being deleted safely in the destructor, especially in the for loop.
To help in the investigation it will be helpful to us to have some more information in the example code: Specifically, please could you supply us the XML file or string for the variable cda_file_path
or something simple if it is too big or sensitive. Also we need to see the XPath expression used for the variable xPath
.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
This support query is specific to Saxon/C, unfortunately I cannot move this post to the Saxon/C project here: https://saxonica.plan.io/projects/saxon-c/boards
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
Thanks for the fast answer!
I checked your recommendation and updated the code. Problem is still the same or similar:
Code for validation:
class CDAEvaluator:
# SAXCON Library
proc = saxonc.PySaxonProcessor(license=True)
xp = proc.new_xpath_processor()
def evaluate_cda_file(self, xPath, cda_file_path):
try:
self.xp.declare_namespace("xmlns:xsi", "http://www.w3.org/2001/XMLSchema-instance")
self.xp.declare_namespace("", "urn:hl7-org:v3")
self.xp.set_context(file_name=cda_file_path)
results = self.xp.evaluate(xPath)
except:
print("---------------ERROR----------------")
if results is None:
del results
return False
del results
return True
def clean_up(self):
self.xp.clear_parameters()
self.xp.clear_properties()
self.proc.clear_configuration_properties()
self.proc.release()
UNITTEST (that works)
class TestCDAEvaluator(unittest.TestCase):
#Testdata
xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
xPath_a_g_200 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 1820]/patientRole/patient/birthTime/@value"""
cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
#File mit Patienten aelter 6 Jahre
cda_simple_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/simple_birthday.xml"
def test_evaluate_cda_file_True(self):
result = evaluator.evaluate_cda_file(evaluator, self.xPath_a_g_6, self.cda_test_file)
print(result)
evaluator.clean_up(evaluator)
self.assertTrue(result)
def test_evaluate_cda_file_False(self):
result = evaluator.evaluate_cda_file(evaluator, self.xPath_a_g_200, self.cda_simple_file)
print(result)
evaluator.clean_up(evaluator)
self.assertFalse(result)
if __name__ == '__main__':
unittest.main()
CONSOLE OUTPUT:
False
True
----------------------------------------------------------------------
Ran 2 tests in 0.018s
OK
CODE ON THE SERVER-BACKEND
class Evaluation:
def start_evaluation(id, only_current_patient_cohort):
evaluator = CDAEvaluator()
files = r.CDAFile.objects.all()
if only_current_patient_cohort is True:
print("nur aktuelle Kohorte verwenden für Prüfung")
#files = ueberschreiben
criterias = r.Criterium.objects.all().filter(criteria_id=id)
for c in criterias:
for f in files:
#only for testing with loop:
xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
#result = evaluator.evaluate_cda_file(c.xPath, f.file)
result = evaluator.evaluate_cda_file(xPath_a_g_6, cda_test_file)
print (result)
evaluator.clean_up()
CODE ON THE SERVER-BACKEND v2.0 that I tested
class Evaluation:
def start_evaluation(id, only_current_patient_cohort):
files = r.CDAFile.objects.all()
if only_current_patient_cohort is True:
print("nur aktuelle Kohorte verwenden für Prüfung")
#files = ueberschreiben
criterias = r.Criterium.objects.all().filter(criteria_id=id)
for c in criterias:
for f in files:
#only for testing with loop:
evaluator = CDAEvaluator()
xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
#result = evaluator.evaluate_cda_file(c.xPath, f.file)
result = evaluator.evaluate_cda_file(xPath_a_g_6, cda_test_file)
print (result)
evaluator.clean_up()
OUTPUT:
JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x000000010f606c49
Please, contact the vendor of the application.
Core dump will be written to "/cores/core.7665" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited"
Extra information about error is saved in the "jet_err_7665.txt" file.
Trying to unregister a component with mounted embedded files: /usr/local/lib/libsaxoneec.dylib
I attached the last error file and the xml file
Archive.zip (448 KB) Archive.zip |
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
even more strange is that I made the method simple and without the for loop and I get the same error even when it is very similar to the test method in the Unittext:
import recruitmenttool.models as r
from .CDAEvaluator import CDAEvaluator as evaluator
class Evaluation:
def start_evaluation(id, only_current_patient_cohort):
xPath_a_g_6 = """//recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value"""
cda_test_file = "/Volumes/Macintosh HDD/Benutzer/RaikMueller/PyCharmProjects/RecruitmentTool_Backend/resources/ELGA-023-Entlassungsbrief_aerztlich_EIS-FullSupport.xml"
result = evaluator.evaluate_cda_file(evaluator, xPath_a_g_6, cda_test_file)
evaluator.clean_up(evaluator)
print (result)
JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x000000010df16c49
Please, contact the vendor of the application.
Core dump will be written to "/cores/core.9960" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited"
Extra information about error is saved in the "jet_err_9960.txt" file.
The error comes for sure when the Evaluation Method calls "results = self.xp.evaluate(xPath)"
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Thanks for sending in the python script and XML data files.
I ran the script with the linux debugging tool gdb
, which is helpful to get around the JET excelsior interception of C++ exceptions.
Here is the command I ran:
gdb python3 prog.py
Within gdb:
handle SIG35 noprint nostop
run prog.py
bt
gdb output:
Saxon/C 1.2.1 running with Saxon-HE 9.9.1.6C from Saxonica
New processor created, Processor: -175438736
xpathString: //recordTarget[number(substring(patientRole/patient/birthTime/@value,1,4)) < 2015]/patientRole/patient/birthTime/@value
DEBUG: SaxonCAPI: param-name: resources, type of Value= java.lang.String
DEBUG: SaxonCAPI: param-name: s, type of Value= java.lang.String
Thread 1 "python3" received signal SIGSEGV, Segmentation fault.
0x0000000000b340d0 in ?? ()
(gdb) bt
#0 0x0000000000b340d0 in ?? ()
#1 0x00007ffff677c120 in JNIEnv_::DeleteGlobalRef (gref=<optimised out>,
this=<optimised out>) at ../jni/jni.h:848
#2 SaxonProcessor::~SaxonProcessor (this=0xb5cfc0, __in_chrg=<optimised out>)
at ../SaxonProcessor.cpp:276
#3 0x00007ffff6743334 in __pyx_pf_6saxonc_16PySaxonProcessor_2__dealloc__ (
__pyx_v_self=0x7ffff7f5d258) at saxonc.cpp:1862
#4 __pyx_pw_6saxonc_16PySaxonProcessor_3__dealloc__ (
__pyx_v_self=0x7ffff7f5d258) at saxonc.cpp:1845
#5 __pyx_tp_dealloc_6saxonc_PySaxonProcessor (o=0x7ffff7f5d258)
at saxonc.cpp:34598
#6 0x00000000005929f1 in ?? ()
#7 0x00000000005890f3 in ?? ()
#8 0x0000000000591ae9 in PyDict_SetItem ()
#9 0x0000000000527d9a in PyImport_Cleanup ()
#10 0x000000000062aa5e in Py_Finalize ()
#11 0x000000000063d6f6 in Py_Main ()
#12 0x00000000004cfd11 in main (
In the stack trace the seg error is coming in the jni cal DeleteGlobalRef
. This jni method is used in the SaxonProcessor destructor. See the file file SaxonProcessor.cpp.
The following line of code the SaxonProcessor.cpp needs removing:
SaxonProcessor::sxn_environ->env->DeleteGlobalRef(proc);
When I comment this line out and rebuild the product the python script works.
Also the following code snippet in the SaxonProcessor constructor needs removing
SaxonProcessor::sxn_environ->env->NewGlobalRef(proc);
I have removed it in our development branch some time ago as I detected a problem in this area, but did not release users would trip up on this bug as it is present in the released code. The jni use of NewGlobalRef/DeleteGlobalRef was wrongly used.
I hope that is the same problem when used in the for loop.
I will raise a bug for this issue shortly for you to keep track and for other users to find the work around before the next release.
Thanks again for reporting the issue.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Bug issue created for the bug #4520
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
I have the 1.2.1 EEC libsaxon and this two lines of code are not existing. File is attached
SaxonProcessor.cpp (27.4 KB) SaxonProcessor.cpp |
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
The same is in the HEC Lib
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Yes you are right. I seem to have a modified version.
I now have the same version as in the release. So far I cannot reproduce the error.
Are you able to run the debugger tool gdb?
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
Did you also try it with a loop?
In my UnitTest it also works fine but when I run the UnitTest 4-5 Times in a row or looping I get this exception and my python3 crashes.
#UNIT TEST:
def test_evaluate_cda_file_True(self):
for x in range(6):
result = evaluator.evaluate_cda_file(evaluator, self.xPath_a_g_6, self.cda_test_file)
print(result)
evaluator.clean_up(evaluator)
self.assertTrue(result)
#crashes after the first loop
#output
Python(10138,0x7fffc3d253c0) malloc: *** error for object 0x7fadfcded4b0: pointer being freed was not allocated
*** set a breakpoint in malloc_error_break to debug
The script what is always crashing is impl. in a Python Django Backend. Neither a loop or just with one call it always crashes what confuses me.
I will try to install and run it with the debugger tool tomorrow.
PythonError Log.txt (41.5 KB) PythonError Log.txt |
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
You should not call the release() function more than once in a program. I can see the clean_up calls the release function inside the for loop
Only use it at the end of the python script.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
Thanks, that fixed the problem in my UniTest and I can run a loop of 200 times and no problems.
Do you have any idea what could be the problem when I run the same process in my backend?
Two different behaviours:
I loop the method and get following output on my console:
[JR_lazyJITCodeGen @ 1]: Failed to initialize lazy JIT compiler thread
JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x00000001070e3c49
Please, contact the vendor of the application.
Core dump will be written to "/cores/core.12693" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited"
Extra information about error is saved in the "jet_err_12693.txt" file.
The error happens when I call inside my method "results = xp.evaluate(xPath)"
Plus the console from my python django server says after the error:
Trying to unregister a component with mounted embedded files: /usr/local/lib/libsaxoneec.dylib
In the Error File:
" JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x00000001070e3c49 Please, contact the vendor of the application. Core dump will be written to "/cores/core.12693" (max size 4294967295 kB). To ensure a full core dump, try "ulimit -c unlimited" "
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
I will have to install the python django server and experiment how it working with Saxon/C.
-
I guess python web-application servers is an area that is under tested with Saxon/C. I suspect that this is some threading issue with how web requests are made and how and when the call of the release function.
-
I think the release() function is not being called at the end of a python script. But difficult to say without having the environment to investigate it further.
I will try to setup the django and reproduce the error.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
btw: The Unit Test I run in Pycharm
I trigger now the UnitTest with the method from the server backend and get the same results - but it works while running in Pycharm:
Python Crash:
Process: Python [14491]
Path: /usr/local/Cellar/python/3.7.7/Frameworks/Python.framework/Versions/3.7/Resources/Python.app/Contents/MacOS/Python
Identifier: Python
Version: 3.7.7 (3.7.7)
Code Type: X86-64 (Native)
Parent Process: Python [14382]
Responsible: Python [14491]
User ID: 501
Date/Time: 2020-04-16 11:55:40.700 +0200
OS Version: Mac OS X 10.12.5 (16F73)
Report Version: 12
Anonymous UUID: BCB5F78F-17E8-C18D-328C-D2B78E33E500
Time Awake Since Boot: 9000 seconds
System Integrity Protection: disabled
Crashed Thread: 15
Exception Type: EXC_BAD_ACCESS (SIGABRT)
Exception Codes: EXC_I386_GPFLT
Exception Note: EXC_CORPSE_NOTIFY
Application Specific Information:
abort() called
Thread 0:: Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 org.python.python 0x000000010db56552 take_gil + 230
3 org.python.python 0x000000010db56a82 PyEval_RestoreThread + 31
4 org.python.python 0x000000010dba7eaf ScandirIterator_iternext + 318
5 org.python.python 0x000000010dade5f1 list_extend + 169
6 org.python.python 0x000000010dadf7ec list___init__ + 136
7 org.python.python 0x000000010db0525e type_call + 178
8 org.python.python 0x000000010daca2a2 _PyObject_FastCallKeywords + 359
9 org.python.python 0x000000010db5fd2d call_function + 729
10 org.python.python 0x000000010db584dd _PyEval_EvalFrameDefault + 5716
11 org.python.python 0x000000010dad5f96 gen_send_ex + 244
12 org.python.python 0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
13 org.python.python 0x000000010dad5f96 gen_send_ex + 244
14 org.python.python 0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
15 org.python.python 0x000000010dad5f96 gen_send_ex + 244
16 org.python.python 0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
17 org.python.python 0x000000010dad5f96 gen_send_ex + 244
18 org.python.python 0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
19 org.python.python 0x000000010dad5f96 gen_send_ex + 244
20 org.python.python 0x000000010db5b038 _PyEval_EvalFrameDefault + 16815
21 org.python.python 0x000000010dad5f96 gen_send_ex + 244
22 org.python.python 0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
23 org.python.python 0x000000010dad5f96 gen_send_ex + 244
24 org.python.python 0x000000010db57ba4 _PyEval_EvalFrameDefault + 3355
25 org.python.python 0x000000010dad5f96 gen_send_ex + 244
26 org.python.python 0x000000010db55321 builtin_next + 99
27 org.python.python 0x000000010dacaf0c _PyMethodDef_RawFastCallKeywords + 525
28 org.python.python 0x000000010daca445 _PyCFunction_FastCallKeywords + 44
29 org.python.python 0x000000010db5fcc4 call_function + 624
30 org.python.python 0x000000010db584dd _PyEval_EvalFrameDefault + 5716
31 org.python.python 0x000000010daca824 function_code_fastcall + 116
32 org.python.python 0x000000010db5fd34 call_function + 736
33 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
34 org.python.python 0x000000010daca824 function_code_fastcall + 116
35 org.python.python 0x000000010db5fd34 call_function + 736
36 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
37 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
38 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
39 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
40 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
41 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
42 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
43 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
44 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
45 org.python.python 0x000000010dacb209 _PyObject_Call_Prepend + 150
46 org.python.python 0x000000010daca553 PyObject_Call + 136
47 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
48 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
49 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
50 org.python.python 0x000000010dacb209 _PyObject_Call_Prepend + 150
51 org.python.python 0x000000010daca553 PyObject_Call + 136
52 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
53 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
54 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
55 org.python.python 0x000000010dacb209 _PyObject_Call_Prepend + 150
56 org.python.python 0x000000010daca553 PyObject_Call + 136
57 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
58 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
59 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
60 org.python.python 0x000000010dacb209 _PyObject_Call_Prepend + 150
61 org.python.python 0x000000010daca553 PyObject_Call + 136
62 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
63 org.python.python 0x000000010daca824 function_code_fastcall + 116
64 org.python.python 0x000000010db5fd34 call_function + 736
65 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
66 org.python.python 0x000000010daca824 function_code_fastcall + 116
67 org.python.python 0x000000010db5fd34 call_function + 736
68 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
69 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
70 org.python.python 0x000000010daca40a _PyFunction_FastCallKeywords + 234
71 org.python.python 0x000000010db5fd34 call_function + 736
72 org.python.python 0x000000010db584dd _PyEval_EvalFrameDefault + 5716
73 org.python.python 0x000000010daca824 function_code_fastcall + 116
74 org.python.python 0x000000010db5fd34 call_function + 736
75 org.python.python 0x000000010db584dd _PyEval_EvalFrameDefault + 5716
76 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
77 org.python.python 0x000000010db56e01 PyEval_EvalCode + 42
78 org.python.python 0x000000010db85944 run_mod + 54
79 org.python.python 0x000000010db84990 PyRun_FileExFlags + 180
80 org.python.python 0x000000010db84050 PyRun_SimpleFileExFlags + 283
81 org.python.python 0x000000010db9c43b pymain_main + 5051
82 org.python.python 0x000000010db9cd2f _Py_UnixMain + 75
83 libdyld.dylib 0x00007fffbae12235 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fffbaf411ce __sigsuspend + 10
1 libsaxoneec.dylib 0x00000001107c4e99 JNI_GetDefaultJavaVMInitArgs + 750137
2 ??? 0x00000002ffffffff 0 + 12884901887
Thread 2:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 3:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 4:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 5:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 6:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 7:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 8:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb49263 0x10fb45000 + 16995
Thread 9:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb54c58 0x10fb45000 + 64600
Thread 10:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb551d0 0x10fb45000 + 66000
3 ??? 0x0000206000000000 0 + 35596688949248
Thread 11:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb54c58 0x10fb45000 + 64600
Thread 12:
0 libsystem_pthread.dylib 0x00007fffbb02b070 start_wqthread + 0
1 ??? 0x007865646e496d65 0 + 33888479226719589
Thread 13:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 libsaxoneec.dylib 0x000000010fb551d0 0x10fb45000 + 66000
Thread 14:
0 libsystem_kernel.dylib 0x00007fffbaf40bf2 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fffbb02c7fa _pthread_cond_wait + 712
2 org.python.python 0x000000010db56552 take_gil + 230
3 org.python.python 0x000000010db56a82 PyEval_RestoreThread + 31
4 select.cpython-37m-darwin.so 0x000000010e0f39d6 poll_poll + 455
5 org.python.python 0x000000010dacadf2 _PyMethodDef_RawFastCallKeywords + 243
6 org.python.python 0x000000010dacf7ea _PyMethodDescr_FastCallKeywords + 82
7 org.python.python 0x000000010db5fd61 call_function + 781
8 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
9 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
10 org.python.python 0x000000010daca40a _PyFunction_FastCallKeywords + 234
11 org.python.python 0x000000010db5fd34 call_function + 736
12 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
13 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
14 org.python.python 0x000000010daca40a _PyFunction_FastCallKeywords + 234
15 org.python.python 0x000000010db5fd34 call_function + 736
16 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
17 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
18 org.python.python 0x000000010daca40a _PyFunction_FastCallKeywords + 234
19 org.python.python 0x000000010db5fd34 call_function + 736
20 org.python.python 0x000000010db5858c _PyEval_EvalFrameDefault + 5891
21 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
22 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
23 org.python.python 0x000000010dacb209 _PyObject_Call_Prepend + 150
24 org.python.python 0x000000010daca553 PyObject_Call + 136
25 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
26 org.python.python 0x000000010db6060d _PyEval_EvalCodeWithName + 1928
27 org.python.python 0x000000010daca06a _PyFunction_FastCallDict + 447
28 org.python.python 0x000000010db5877c _PyEval_EvalFrameDefault + 6387
29 org.python.python 0x000000010daca824 function_code_fastcall + 116
30 org.python.python 0x000000010db5fd34 call_function + 736
31 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
32 org.python.python 0x000000010daca824 function_code_fastcall + 116
33 org.python.python 0x000000010db5fd34 call_function + 736
34 org.python.python 0x000000010db5841c _PyEval_EvalFrameDefault + 5523
35 org.python.python 0x000000010daca824 function_code_fastcall + 116
36 org.python.python 0x000000010dacb209 _PyObject_Call_Prepend + 150
37 org.python.python 0x000000010daca553 PyObject_Call + 136
38 org.python.python 0x000000010dbc6353 t_bootstrap + 71
39 org.python.python 0x000000010db8df00 pythread_wrapper + 25
40 libsystem_pthread.dylib 0x00007fffbb02b93b _pthread_body + 180
41 libsystem_pthread.dylib 0x00007fffbb02b887 _pthread_start + 286
42 libsystem_pthread.dylib 0x00007fffbb02b08d thread_start + 13
Thread 15 Crashed:
0 libsystem_kernel.dylib 0x00007fffbaf40d42 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fffbb02e457 pthread_kill + 90
2 libsystem_c.dylib 0x00007fffbaea6420 abort + 129
Thread 15 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000000000006 rcx: 0x0000700007303ff8 rdx: 0x0000000000000000
rdi: 0x0000000000001f07 rsi: 0x0000000000000006 rbp: 0x0000700007304020 rsp: 0x0000700007303ff8
r8: 0x0000000000000040 r9: 0x00007fffc3cfb2c8 r10: 0x0000000008000000 r11: 0x0000000000000206
r12: 0x0000000000000000 r13: 0x0000000000000000 r14: 0x000070000730b000 r15: 0x0000000000000001
rip: 0x00007fffbaf40d42 rfl: 0x0000000000000206 cr2: 0x00007fffc3d07128
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
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External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 6
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
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thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=230.2M resident=0K(0%) swapped_out_or_unallocated=230.2M(100%)
Writable regions: Total=65.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=65.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
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shared memory 44K 5
=========== ======= =======
TOTAL 65.4G 549
TOTAL, minus reserved VM space 697.6M 549
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
O'Neil Delpratt wrote:
- I think the release() function is not being called at the end of a python script. But difficult to say without having the environment to investigate it further.
I will try to setup the django and reproduce the error.
- I can confirm it already. When I comment out the line "results = xp.evaluate(xPath)" in the evaluation method, so immediately go to the clean_up method the "release" call freezes and the server stoped working.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
The workaround is probably not to call the release() method as it seems to be not allowing other threads to create a new SaxonProcessor. I will look to investigate this further.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Hi,
So far I have install django on my linux machine. Is it possible that you can send some instructions to run on Django and or maybe a zip file of the files you are using please
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
I can provide you a copy of my github repository.
But I think the easiest way would be a Django Server with an REST API and when a POST Method is running I call the Saxon Library to evaluate incoming XML Files.
But just by running a mockup method (based on the python examples von saxon) I could reproduce the error.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Raik Müller wrote:
I can provide you a copy of my github repository.
But I think the easiest way would be a Django Server with an REST API and when a POST Method is running I call the Saxon Library to evaluate incoming XML Files.
To set this up I would need some instructions please
But just by running a mockup method (based on the python examples von saxon) I could reproduce the error.
This would be better if it helps for me to reproduce the error. As long it is self-contained so I can run it without references to another machine please.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
Ok.
So to setup a Django Server with an REST API you can follow most of this article:
https://medium.com/swlh/build-your-first-rest-api-with-django-rest-framework-e394e39a482c
I think you are able to start with point 3 if you installed Django already.
You can skip the stuff with model because you just need the framework installed. After that, you can create a POST Method in the views.py in the app you created.
from django.views.decorators.csrf import csrf_exempt
from rest_framework.response import Response
from rest_framework import status
from rest_framework.decorators import api_view
@csrf_exempt
@api_view(('POST',))
def create_new_criteria(request):
if request.method == 'POST'
# run here a method from the examples provided by saxon.
# so the error should happen as soon you create in saxon object like:
# proc = saxonc.PySaxonProcessor(license=True)
# I guess you should also use also the xPath object to be sure the error happen
return Response(status=status.HTTP_400_BAD_REQUEST)
Don't forget to register your POST Method in the url.py in the app folder:
urlpatterns = [ path('create/', create_new_criteria, name='create_new_criteria'), ]
example: localhost:8080/api/create/
api = the app name you decided in your django project create is the link to the POST Method
If you have any questions, let me know.
I hope I can help you with that.
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Hi,
I am getting the following error after modifying the url.py:
urlpatterns = [path('admin/', admin.site.urls), path('create/', create_new_criteria, name='create_new_criteria'), ]
NameError: name 'create_new_criteria' is not defined
Any ideas please?
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by Raik Müller over 4 years ago
could be an import error
maybe
from api.views import create_new_criteria
is missing
the api.views.py should look like in the last post
folderstructur:
-project --api ---views.py ---urls.py
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Thanks that was the problem. When I try to run the server I am not getting the following error:
django.core.management.base.SystemCheckError: SystemCheckError: System check identified some issues:
ERRORS:
?: (admin.E408) 'django.contrib.auth.middleware.AuthenticationMiddleware' must be in MIDDLEWARE in order to use the admin application.
?: (admin.E409) 'django.contrib.messages.middleware.MessageMiddleware' must be in MIDDLEWARE in order to use the admin application.
?: (admin.E410) 'django.contrib.sessions.middleware.SessionMiddleware' must be in MIDDLEWARE in order to use the admin application.
System check identified 3 issues (0 silenced)
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
I found the answer I had to change MIDDLEWARE_CLASSES
to MIDDLEWARE
in the settings.py file
RE: JET RUNTIME HAS DETECTED UNRECOVERABLE ERROR: system exception at 0x0000000101a1bf56 - Added by O'Neil Delpratt over 4 years ago
Finally got the django server working. Just having issues with finding Saxon/C
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